Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 AC006970.2-201ENST00000450065 779 ntBASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD3Q3KNS1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 AC121338.2-201ENST00000622535 1744 ntBASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 CROCCP5-201ENST00000436658 830 ntBASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 KRT18P20-201ENST00000548986 1279 ntBASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD3Q3KNS1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PTCHD3Q3KNS1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 MIR663A-201ENST00000385250 93 ntBASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 MYCNOS-205ENST00000641950 531 ntBASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 AC006128.1-201ENST00000624704 1661 ntBASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTCHD3Q3KNS1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
PTCHD3Q3KNS1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms