Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 AC026310.3-201ENST00000625186 2373 ntBASIC20.53■□□□□ 0.88
LRRK1Q38SD2 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 AC100791.3-201ENST00000617619 330 ntBASIC20.53■□□□□ 0.88
LRRK1Q38SD2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
LRRK1Q38SD2 AC105020.6-201ENST00000621523 1217 ntBASIC20.53■□□□□ 0.88
LRRK1Q38SD2 MIR2861-201ENST00000636310 90 ntBASIC20.53■□□□□ 0.88
LRRK1Q38SD2 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRRK1Q38SD2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
LRRK1Q38SD2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 AC092118.2-201ENST00000613495 667 ntBASIC20.51■□□□□ 0.87
LRRK1Q38SD2 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LRRK1Q38SD2 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRK1Q38SD2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 MIR4758-201ENST00000577688 71 ntBASIC20.49■□□□□ 0.87
LRRK1Q38SD2 AC133041.1-202ENST00000642053 222 ntBASIC20.49■□□□□ 0.87
LRRK1Q38SD2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRK1Q38SD2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRK1Q38SD2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms