Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 AC137767.1-201ENST00000602918 1920 ntBASIC19.85■□□□□ 0.77
COL28A1Q2UY09 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 TSPY7P-201ENST00000431358 1114 ntBASIC19.84■□□□□ 0.77
COL28A1Q2UY09 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 RN7SL471P-201ENST00000580476 299 ntBASIC19.84■□□□□ 0.77
COL28A1Q2UY09 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL28A1Q2UY09 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 KRT17P2-201ENST00000300992 1314 ntBASIC19.83■□□□□ 0.77
COL28A1Q2UY09 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 LSM12P1-201ENST00000411836 588 ntBASIC19.83■□□□□ 0.77
COL28A1Q2UY09 AC087499.1-201ENST00000418141 1075 ntBASIC19.83■□□□□ 0.77
COL28A1Q2UY09 KRT17P3-201ENST00000420566 1262 ntBASIC19.83■□□□□ 0.77
COL28A1Q2UY09 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL28A1Q2UY09 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 GUSBP5-202ENST00000510805 1989 ntBASIC19.83■□□□□ 0.76
COL28A1Q2UY09 AC080038.3-201ENST00000623346 1952 ntBASIC19.83■□□□□ 0.76
COL28A1Q2UY09 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.83■□□□□ 0.76
COL28A1Q2UY09 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
COL28A1Q2UY09 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
COL28A1Q2UY09 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms