Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CKS1BP61024 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CKS1BP61024 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 TUB-203ENST00000534099 1759 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CKS1BP61024 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CKS1BP61024 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CKS1BP61024 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CKS1BP61024 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC14.38□□□□□ -0.11
CKS1BP61024 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS1BP61024 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS1BP61024 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS1BP61024 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 AC005229.4-201ENST00000610085 2198 ntBASIC14.37□□□□□ -0.11
CKS1BP61024 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CKS1BP61024 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
CKS1BP61024 AL356309.3-201ENST00000624132 1934 ntBASIC14.37□□□□□ -0.11
CKS1BP61024 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CKS1BP61024 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CKS1BP61024 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC14.37□□□□□ -0.11
CKS1BP61024 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC14.37□□□□□ -0.11
CKS1BP61024 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS1BP61024 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS1BP61024 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CKS1BP61024 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS1BP61024 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.36□□□□□ -0.11
CKS1BP61024 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC14.36□□□□□ -0.11
CKS1BP61024 CD72-202ENST00000378430 585 ntTSL 3 BASIC14.36□□□□□ -0.11
CKS1BP61024 TFPT-201ENST00000391757 774 ntTSL 5 BASIC14.36□□□□□ -0.11
CKS1BP61024 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CKS1BP61024 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC14.36□□□□□ -0.11
CKS1BP61024 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CKS1BP61024 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC14.36□□□□□ -0.11
CKS1BP61024 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CKS1BP61024 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS1BP61024 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CKS1BP61024 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS1BP61024 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC14.35□□□□□ -0.11
CKS1BP61024 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms