Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SRP54P61011 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SRP54P61011 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SRP54P61011 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.39■□□□□ 0.86
SRP54P61011 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
SRP54P61011 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SRP54P61011 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SRP54P61011 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SRP54P61011 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.39■□□□□ 0.85
SRP54P61011 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.39■□□□□ 0.85
SRP54P61011 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.39■□□□□ 0.85
SRP54P61011 AL355472.2-201ENST00000422958 438 ntBASIC20.39■□□□□ 0.85
SRP54P61011 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.39■□□□□ 0.85
SRP54P61011 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.39■□□□□ 0.85
SRP54P61011 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.39■□□□□ 0.85
SRP54P61011 AC091874.3-201ENST00000512672 1195 ntBASIC20.39■□□□□ 0.85
SRP54P61011 RNA5SP413-201ENST00000516373 109 ntBASIC20.39■□□□□ 0.85
SRP54P61011 TMEM191A-211ENST00000637163 1067 ntBASIC20.39■□□□□ 0.85
SRP54P61011 MYC-209ENST00000641252 345 ntBASIC20.39■□□□□ 0.85
SRP54P61011 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
SRP54P61011 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SRP54P61011 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
SRP54P61011 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.38■□□□□ 0.85
SRP54P61011 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.38■□□□□ 0.85
SRP54P61011 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SRP54P61011 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SRP54P61011 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.38■□□□□ 0.85
SRP54P61011 DUSP5P2-201ENST00000426873 1033 ntBASIC20.38■□□□□ 0.85
SRP54P61011 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.38■□□□□ 0.85
SRP54P61011 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.38■□□□□ 0.85
SRP54P61011 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
SRP54P61011 AC083880.1-201ENST00000608266 535 ntBASIC20.38■□□□□ 0.85
SRP54P61011 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SRP54P61011 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SRP54P61011 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SRP54P61011 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.37■□□□□ 0.85
SRP54P61011 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.37■□□□□ 0.85
SRP54P61011 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SRP54P61011 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.37■□□□□ 0.85
SRP54P61011 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.37■□□□□ 0.85
SRP54P61011 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.37■□□□□ 0.85
SRP54P61011 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.37■□□□□ 0.85
SRP54P61011 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.37■□□□□ 0.85
SRP54P61011 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.37■□□□□ 0.85
SRP54P61011 CYP2T3P-201ENST00000601990 817 ntBASIC20.37■□□□□ 0.85
SRP54P61011 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.37■□□□□ 0.85
SRP54P61011 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SRP54P61011 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SRP54P61011 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.37■□□□□ 0.85
SRP54P61011 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 AL117328.2-201ENST00000624617 1940 ntBASIC20.36■□□□□ 0.85
SRP54P61011 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 MCRIP2P1-201ENST00000394346 511 ntBASIC20.36■□□□□ 0.85
SRP54P61011 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SRP54P61011 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 FAM201B-201ENST00000458407 597 ntBASIC20.36■□□□□ 0.85
SRP54P61011 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.36■□□□□ 0.85
SRP54P61011 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 KRT17P1-201ENST00000399211 1546 ntBASIC20.36■□□□□ 0.85
SRP54P61011 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.36■□□□□ 0.85
SRP54P61011 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SRP54P61011 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SRP54P61011 AL024507.2-201ENST00000606070 2574 ntBASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms