Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMK2P53671 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMK2P53671 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMK2P53671 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMK2P53671 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMK2P53671 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMK2P53671 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LIMK2P53671 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMK2P53671 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMK2P53671 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMK2P53671 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMK2P53671 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMK2P53671 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
LIMK2P53671 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
LIMK2P53671 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMK2P53671 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMK2P53671 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMK2P53671 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 CDCA4P2-201ENST00000441182 718 ntBASIC20.82■□□□□ 0.92
LIMK2P53671 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMK2P53671 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.82■□□□□ 0.92
LIMK2P53671 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 RAP2CP1-201ENST00000605103 478 ntBASIC20.82■□□□□ 0.92
LIMK2P53671 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMK2P53671 BID-214ENST00000617586 542 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 AC073111.5-205ENST00000641717 521 ntBASIC20.82■□□□□ 0.92
LIMK2P53671 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMK2P53671 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.82■□□□□ 0.92
LIMK2P53671 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LIMK2P53671 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
LIMK2P53671 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 AC121338.2-201ENST00000622535 1744 ntBASIC20.81■□□□□ 0.92
LIMK2P53671 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 AP005212.1-201ENST00000581547 1997 ntBASIC20.81■□□□□ 0.92
LIMK2P53671 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.81■□□□□ 0.92
LIMK2P53671 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMK2P53671 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.81■□□□□ 0.92
LIMK2P53671 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LIMK2P53671 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMK2P53671 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMK2P53671 GABARAPL3-202ENST00000624044 1851 ntBASIC20.8■□□□□ 0.92
LIMK2P53671 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMK2P53671 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMK2P53671 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.8■□□□□ 0.92
LIMK2P53671 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMK2P53671 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.8■□□□□ 0.92
LIMK2P53671 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LIMK2P53671 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMK2P53671 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.8■□□□□ 0.92
LIMK2P53671 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMK2P53671 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMK2P53671 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
LIMK2P53671 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.8■□□□□ 0.92
LIMK2P53671 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMK2P53671 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIMK2P53671 AC092667.1-201ENST00000434301 2586 ntBASIC20.79■□□□□ 0.92
LIMK2P53671 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
LIMK2P53671 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LIMK2P53671 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMK2P53671 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIMK2P53671 KRT18P11-201ENST00000435214 1283 ntBASIC20.79■□□□□ 0.92
LIMK2P53671 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK2P53671 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms