Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.91■□□□□ 0.94
TNFRSF4P43489 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 SOX15-203ENST00000570788 1093 ntBASIC20.91■□□□□ 0.94
TNFRSF4P43489 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFRSF4P43489 AC087633.2-202ENST00000565166 1439 ntBASIC20.9■□□□□ 0.94
TNFRSF4P43489 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFRSF4P43489 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFRSF4P43489 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 PGM5P4-201ENST00000421970 445 ntBASIC20.9■□□□□ 0.94
TNFRSF4P43489 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TNFRSF4P43489 RN7SL471P-201ENST00000580476 299 ntBASIC20.9■□□□□ 0.94
TNFRSF4P43489 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFRSF4P43489 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.9■□□□□ 0.94
TNFRSF4P43489 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.89■□□□□ 0.94
TNFRSF4P43489 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TNFRSF4P43489 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TNFRSF4P43489 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 RPPH1-201ENST00000516869 333 ntBASIC20.89■□□□□ 0.93
TNFRSF4P43489 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
TNFRSF4P43489 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFRSF4P43489 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TNFRSF4P43489 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFRSF4P43489 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 AL596275.1-201ENST00000423464 877 ntBASIC20.88■□□□□ 0.93
TNFRSF4P43489 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFRSF4P43489 AC008550.1-201ENST00000511500 884 ntBASIC20.88■□□□□ 0.93
TNFRSF4P43489 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFRSF4P43489 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.88■□□□□ 0.93
TNFRSF4P43489 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TNFRSF4P43489 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 GUSBP5-202ENST00000510805 1989 ntBASIC20.87■□□□□ 0.93
TNFRSF4P43489 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 C1QBPP2-201ENST00000528754 825 ntBASIC20.87■□□□□ 0.93
TNFRSF4P43489 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 FAM197Y4-202ENST00000622692 608 ntBASIC20.87■□□□□ 0.93
TNFRSF4P43489 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFRSF4P43489 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TNFRSF4P43489 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFRSF4P43489 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TNFRSF4P43489 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms