Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.92■□□□□ 0.62
RFC3P40938 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFC3P40938 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFC3P40938 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFC3P40938 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.92■□□□□ 0.62
RFC3P40938 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.91■□□□□ 0.62
RFC3P40938 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
RFC3P40938 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
RFC3P40938 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RFC3P40938 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
RFC3P40938 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.91■□□□□ 0.62
RFC3P40938 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.91■□□□□ 0.62
RFC3P40938 AC092118.2-201ENST00000613495 667 ntBASIC18.91■□□□□ 0.62
RFC3P40938 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RFC3P40938 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFC3P40938 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.91■□□□□ 0.62
RFC3P40938 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFC3P40938 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.9■□□□□ 0.62
RFC3P40938 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFC3P40938 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFC3P40938 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.9■□□□□ 0.62
RFC3P40938 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.9■□□□□ 0.62
RFC3P40938 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFC3P40938 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.9■□□□□ 0.62
RFC3P40938 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFC3P40938 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.9■□□□□ 0.62
RFC3P40938 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.9■□□□□ 0.62
RFC3P40938 AL162412.1-201ENST00000567129 965 ntBASIC18.9■□□□□ 0.62
RFC3P40938 ECEL1P1-201ENST00000373592 1742 ntBASIC18.9■□□□□ 0.62
RFC3P40938 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFC3P40938 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFC3P40938 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RFC3P40938 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RFC3P40938 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.89■□□□□ 0.61
RFC3P40938 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
RFC3P40938 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.89■□□□□ 0.61
RFC3P40938 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.89■□□□□ 0.61
RFC3P40938 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.89■□□□□ 0.61
RFC3P40938 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.89■□□□□ 0.61
RFC3P40938 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.89■□□□□ 0.61
RFC3P40938 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 RNF165-205ENST00000588679 2904 ntBASIC18.89■□□□□ 0.61
RFC3P40938 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.89■□□□□ 0.61
RFC3P40938 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RFC3P40938 EP400NL-214ENST00000641289 2402 ntBASIC18.89■□□□□ 0.61
RFC3P40938 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.88■□□□□ 0.61
RFC3P40938 DUSP5P2-201ENST00000426873 1033 ntBASIC18.88■□□□□ 0.61
RFC3P40938 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 AC083880.1-201ENST00000608266 535 ntBASIC18.88■□□□□ 0.61
RFC3P40938 TMEM191A-211ENST00000637163 1067 ntBASIC18.88■□□□□ 0.61
RFC3P40938 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
RFC3P40938 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RFC3P40938 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.87■□□□□ 0.61
RFC3P40938 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RFC3P40938 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.87■□□□□ 0.61
RFC3P40938 CDV3P1-201ENST00000471403 739 ntBASIC18.87■□□□□ 0.61
RFC3P40938 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.87■□□□□ 0.61
RFC3P40938 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.87■□□□□ 0.61
RFC3P40938 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.87■□□□□ 0.61
RFC3P40938 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.87■□□□□ 0.61
RFC3P40938 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RFC3P40938 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RFC3P40938 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
RFC3P40938 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.86■□□□□ 0.61
RFC3P40938 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFC3P40938 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
RFC3P40938 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RFC3P40938 KRT17P1-201ENST00000399211 1546 ntBASIC18.86■□□□□ 0.61
RFC3P40938 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms