Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
XRCC1P18887 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC1P18887 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC1P18887 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
XRCC1P18887 POU5F1P4-201ENST00000413175 1085 ntBASIC20.58■□□□□ 0.89
XRCC1P18887 DUX4L16-201ENST00000555130 1264 ntBASIC20.58■□□□□ 0.89
XRCC1P18887 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
XRCC1P18887 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC1P18887 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC1P18887 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
XRCC1P18887 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
XRCC1P18887 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.57■□□□□ 0.88
XRCC1P18887 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
XRCC1P18887 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.57■□□□□ 0.88
XRCC1P18887 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.57■□□□□ 0.88
XRCC1P18887 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.57■□□□□ 0.88
XRCC1P18887 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
XRCC1P18887 AC231657.2-201ENST00000624556 255 ntBASIC20.57■□□□□ 0.88
XRCC1P18887 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.57■□□□□ 0.88
XRCC1P18887 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
XRCC1P18887 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.56■□□□□ 0.88
XRCC1P18887 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.56■□□□□ 0.88
XRCC1P18887 SLC7A5P2-201ENST00000553010 536 ntBASIC20.56■□□□□ 0.88
XRCC1P18887 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
XRCC1P18887 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
XRCC1P18887 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.56■□□□□ 0.88
XRCC1P18887 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
XRCC1P18887 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.56■□□□□ 0.88
XRCC1P18887 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.56■□□□□ 0.88
XRCC1P18887 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 ID1-201ENST00000376105 1233 ntBASIC20.55■□□□□ 0.88
XRCC1P18887 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
XRCC1P18887 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 AC120498.10-201ENST00000621827 505 ntBASIC20.55■□□□□ 0.88
XRCC1P18887 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
XRCC1P18887 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.55■□□□□ 0.88
XRCC1P18887 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.55■□□□□ 0.88
XRCC1P18887 LINC01006-201ENST00000333319 2292 ntBASIC20.55■□□□□ 0.88
XRCC1P18887 AC026471.6-201ENST00000622954 1905 ntBASIC20.55■□□□□ 0.88
XRCC1P18887 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.54■□□□□ 0.88
XRCC1P18887 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
XRCC1P18887 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
XRCC1P18887 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
XRCC1P18887 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.54■□□□□ 0.88
XRCC1P18887 CROCCP5-201ENST00000436658 830 ntBASIC20.54■□□□□ 0.88
XRCC1P18887 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.54■□□□□ 0.88
XRCC1P18887 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.54■□□□□ 0.88
XRCC1P18887 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.54■□□□□ 0.88
XRCC1P18887 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.54■□□□□ 0.88
XRCC1P18887 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.54■□□□□ 0.88
XRCC1P18887 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
XRCC1P18887 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
XRCC1P18887 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
XRCC1P18887 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
XRCC1P18887 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
XRCC1P18887 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
XRCC1P18887 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms