Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.65■■□□□ 1.06
VCANP13611 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
VCANP13611 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
VCANP13611 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.65■■□□□ 1.06
VCANP13611 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
VCANP13611 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.06
VCANP13611 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.64■■□□□ 1.06
VCANP13611 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VCANP13611 NUDT16P1-203ENST00000513809 620 ntBASIC21.64■■□□□ 1.06
VCANP13611 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
VCANP13611 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
VCANP13611 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VCANP13611 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.64■■□□□ 1.05
VCANP13611 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VCANP13611 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VCANP13611 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.64■■□□□ 1.05
VCANP13611 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VCANP13611 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.64■■□□□ 1.05
VCANP13611 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.64■■□□□ 1.05
VCANP13611 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.64■■□□□ 1.05
VCANP13611 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.64■■□□□ 1.05
VCANP13611 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCANP13611 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCANP13611 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.63■■□□□ 1.05
VCANP13611 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.63■■□□□ 1.05
VCANP13611 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.63■■□□□ 1.05
VCANP13611 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
VCANP13611 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.63■■□□□ 1.05
VCANP13611 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.63■■□□□ 1.05
VCANP13611 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCANP13611 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.63■■□□□ 1.05
VCANP13611 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VCANP13611 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.62■■□□□ 1.05
VCANP13611 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.62■■□□□ 1.05
VCANP13611 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
VCANP13611 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.62■■□□□ 1.05
VCANP13611 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.62■■□□□ 1.05
VCANP13611 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.62■■□□□ 1.05
VCANP13611 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.62■■□□□ 1.05
VCANP13611 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.62■■□□□ 1.05
VCANP13611 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.62■■□□□ 1.05
VCANP13611 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.62■■□□□ 1.05
VCANP13611 UNC93B2-201ENST00000285383 730 ntBASIC21.62■■□□□ 1.05
VCANP13611 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VCANP13611 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VCANP13611 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.61■■□□□ 1.05
VCANP13611 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VCANP13611 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.61■■□□□ 1.05
VCANP13611 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.61■■□□□ 1.05
VCANP13611 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VCANP13611 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VCANP13611 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.61■■□□□ 1.05
VCANP13611 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VCANP13611 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.61■■□□□ 1.05
VCANP13611 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VCANP13611 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.61■■□□□ 1.05
VCANP13611 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.61■■□□□ 1.05
VCANP13611 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.61■■□□□ 1.05
VCANP13611 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
VCANP13611 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.6■■□□□ 1.05
VCANP13611 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.6■■□□□ 1.05
VCANP13611 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
VCANP13611 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.6■■□□□ 1.05
VCANP13611 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.6■■□□□ 1.05
VCANP13611 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
VCANP13611 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.6■■□□□ 1.05
VCANP13611 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.6■■□□□ 1.05
VCANP13611 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VCANP13611 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VCANP13611 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.59■■□□□ 1.05
VCANP13611 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VCANP13611 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VCANP13611 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.59■■□□□ 1.05
VCANP13611 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.59■■□□□ 1.05
VCANP13611 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.59■■□□□ 1.05
VCANP13611 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.59■■□□□ 1.05
VCANP13611 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCANP13611 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VCANP13611 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCANP13611 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VCANP13611 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.58■■□□□ 1.05
VCANP13611 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VCANP13611 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VCANP13611 LINC01960-201ENST00000563759 1884 ntBASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms