Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.3■□□□□ 0.68
PDGFAP04085 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PDGFAP04085 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.3■□□□□ 0.68
PDGFAP04085 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 UNC93B4-201ENST00000505679 747 ntBASIC19.3■□□□□ 0.68
PDGFAP04085 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.3■□□□□ 0.68
PDGFAP04085 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.3■□□□□ 0.68
PDGFAP04085 AC243732.1-201ENST00000612648 864 ntBASIC19.3■□□□□ 0.68
PDGFAP04085 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PDGFAP04085 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PDGFAP04085 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.3■□□□□ 0.68
PDGFAP04085 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDGFAP04085 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.29■□□□□ 0.68
PDGFAP04085 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.29■□□□□ 0.68
PDGFAP04085 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.29■□□□□ 0.68
PDGFAP04085 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.29■□□□□ 0.68
PDGFAP04085 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 AP003097.1-201ENST00000530657 1135 ntBASIC19.29■□□□□ 0.68
PDGFAP04085 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.29■□□□□ 0.68
PDGFAP04085 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.29■□□□□ 0.68
PDGFAP04085 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PDGFAP04085 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
PDGFAP04085 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDGFAP04085 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.28■□□□□ 0.68
PDGFAP04085 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.28■□□□□ 0.68
PDGFAP04085 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PDGFAP04085 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.28■□□□□ 0.68
PDGFAP04085 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 AL355472.2-201ENST00000422958 438 ntBASIC19.28■□□□□ 0.68
PDGFAP04085 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.28■□□□□ 0.68
PDGFAP04085 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.28■□□□□ 0.68
PDGFAP04085 KRT17P1-201ENST00000399211 1546 ntBASIC19.28■□□□□ 0.68
PDGFAP04085 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDGFAP04085 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PDGFAP04085 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PDGFAP04085 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PDGFAP04085 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.27■□□□□ 0.68
PDGFAP04085 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PDGFAP04085 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PDGFAP04085 LSM12P1-201ENST00000411836 588 ntBASIC19.27■□□□□ 0.68
PDGFAP04085 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.27■□□□□ 0.68
PDGFAP04085 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.27■□□□□ 0.68
PDGFAP04085 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDGFAP04085 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PDGFAP04085 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.26■□□□□ 0.67
PDGFAP04085 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.26■□□□□ 0.67
PDGFAP04085 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
PDGFAP04085 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.26■□□□□ 0.67
PDGFAP04085 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.26■□□□□ 0.67
PDGFAP04085 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.26■□□□□ 0.67
PDGFAP04085 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.26■□□□□ 0.67
PDGFAP04085 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.26■□□□□ 0.67
PDGFAP04085 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.26■□□□□ 0.67
PDGFAP04085 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.26■□□□□ 0.67
PDGFAP04085 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDGFAP04085 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms