Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RAF1P04049 OXCT2P1-201ENST00000447263 1535 ntBASIC18.67■□□□□ 0.58
RAF1P04049 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.67■□□□□ 0.58
RAF1P04049 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAF1P04049 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RAF1P04049 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 AL121832.2-201ENST00000610979 668 ntBASIC18.66■□□□□ 0.58
RAF1P04049 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.66■□□□□ 0.58
RAF1P04049 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.66■□□□□ 0.58
RAF1P04049 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RAF1P04049 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.66■□□□□ 0.58
RAF1P04049 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RAF1P04049 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAF1P04049 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 AC010141.3-201ENST00000456659 717 ntBASIC18.65■□□□□ 0.58
RAF1P04049 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.65■□□□□ 0.58
RAF1P04049 AC142086.2-201ENST00000569753 217 ntBASIC18.65■□□□□ 0.58
RAF1P04049 SMUG1P1-201ENST00000590640 811 ntBASIC18.65■□□□□ 0.58
RAF1P04049 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.65■□□□□ 0.58
RAF1P04049 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.65■□□□□ 0.58
RAF1P04049 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
RAF1P04049 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.65■□□□□ 0.58
RAF1P04049 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RAF1P04049 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAF1P04049 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.58
RAF1P04049 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.64■□□□□ 0.57
RAF1P04049 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 TSPY20P-201ENST00000450910 630 ntBASIC18.64■□□□□ 0.57
RAF1P04049 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.64■□□□□ 0.57
RAF1P04049 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.64■□□□□ 0.57
RAF1P04049 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.64■□□□□ 0.57
RAF1P04049 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 AC066615.1-201ENST00000640911 628 ntBASIC18.64■□□□□ 0.57
RAF1P04049 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RAF1P04049 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.64■□□□□ 0.57
RAF1P04049 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.64■□□□□ 0.57
RAF1P04049 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAF1P04049 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RAF1P04049 AL157384.1-201ENST00000445995 2473 ntBASIC18.63■□□□□ 0.57
RAF1P04049 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 AC026471.6-201ENST00000622954 1905 ntBASIC18.63■□□□□ 0.57
RAF1P04049 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RAF1P04049 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAF1P04049 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
RAF1P04049 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.63■□□□□ 0.57
RAF1P04049 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAF1P04049 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RAF1P04049 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAF1P04049 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RAF1P04049 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RAF1P04049 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.62■□□□□ 0.57
RAF1P04049 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.62■□□□□ 0.57
RAF1P04049 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.62■□□□□ 0.57
RAF1P04049 MFSD11-216ENST00000590393 1141 ntBASIC18.62■□□□□ 0.57
RAF1P04049 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 AC231657.2-201ENST00000624556 255 ntBASIC18.62■□□□□ 0.57
RAF1P04049 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.62■□□□□ 0.57
RAF1P04049 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.62■□□□□ 0.57
RAF1P04049 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.62■□□□□ 0.57
RAF1P04049 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAF1P04049 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.62■□□□□ 0.57
RAF1P04049 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
RAF1P04049 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RAF1P04049 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RAF1P04049 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RAF1P04049 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms