Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.88■□□□□ 0.77
LDLRP01130 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LDLRP01130 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.88■□□□□ 0.77
LDLRP01130 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.88■□□□□ 0.77
LDLRP01130 KRT18P61-201ENST00000585825 1298 ntBASIC19.88■□□□□ 0.77
LDLRP01130 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.88■□□□□ 0.77
LDLRP01130 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LDLRP01130 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LDLRP01130 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.87■□□□□ 0.77
LDLRP01130 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
LDLRP01130 OR7E47P-201ENST00000546390 1422 ntBASIC19.87■□□□□ 0.77
LDLRP01130 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LDLRP01130 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LDLRP01130 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
LDLRP01130 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.87■□□□□ 0.77
LDLRP01130 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LDLRP01130 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LDLRP01130 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDLRP01130 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
LDLRP01130 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.86■□□□□ 0.77
LDLRP01130 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 AL109923.1-201ENST00000618799 583 ntBASIC19.86■□□□□ 0.77
LDLRP01130 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.86■□□□□ 0.77
LDLRP01130 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.86■□□□□ 0.77
LDLRP01130 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.86■□□□□ 0.77
LDLRP01130 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDLRP01130 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.86■□□□□ 0.77
LDLRP01130 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
LDLRP01130 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LDLRP01130 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.85■□□□□ 0.77
LDLRP01130 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.85■□□□□ 0.77
LDLRP01130 AC006970.2-201ENST00000450065 779 ntBASIC19.85■□□□□ 0.77
LDLRP01130 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.85■□□□□ 0.77
LDLRP01130 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.85■□□□□ 0.77
LDLRP01130 AC066615.1-201ENST00000640911 628 ntBASIC19.85■□□□□ 0.77
LDLRP01130 AC133637.1-201ENST00000624115 1537 ntBASIC19.85■□□□□ 0.77
LDLRP01130 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.85■□□□□ 0.77
LDLRP01130 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDLRP01130 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LDLRP01130 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.84■□□□□ 0.77
LDLRP01130 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.84■□□□□ 0.77
LDLRP01130 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 AP005435.1-201ENST00000529293 1178 ntBASIC19.84■□□□□ 0.77
LDLRP01130 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.84■□□□□ 0.77
LDLRP01130 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LDLRP01130 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.84■□□□□ 0.77
LDLRP01130 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LDLRP01130 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDLRP01130 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms