Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.66■□□□□ 0.74
CPSF4O95639 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.66■□□□□ 0.74
CPSF4O95639 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.66■□□□□ 0.74
CPSF4O95639 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.66■□□□□ 0.74
CPSF4O95639 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4O95639 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
CPSF4O95639 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
CPSF4O95639 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4O95639 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
CPSF4O95639 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 SUDS3P1-201ENST00000505831 966 ntBASIC19.65■□□□□ 0.74
CPSF4O95639 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.65■□□□□ 0.74
CPSF4O95639 EEF1DP3-203ENST00000566025 782 ntBASIC19.65■□□□□ 0.74
CPSF4O95639 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.65■□□□□ 0.74
CPSF4O95639 AC053503.5-201ENST00000601508 636 ntBASIC19.65■□□□□ 0.74
CPSF4O95639 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.65■□□□□ 0.74
CPSF4O95639 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.65■□□□□ 0.74
CPSF4O95639 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.65■□□□□ 0.74
CPSF4O95639 AC061975.6-201ENST00000579045 1553 ntBASIC19.65■□□□□ 0.74
CPSF4O95639 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CPSF4O95639 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CPSF4O95639 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CPSF4O95639 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CPSF4O95639 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.64■□□□□ 0.73
CPSF4O95639 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.64■□□□□ 0.73
CPSF4O95639 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.64■□□□□ 0.73
CPSF4O95639 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CPSF4O95639 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
CPSF4O95639 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CPSF4O95639 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.64■□□□□ 0.73
CPSF4O95639 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CPSF4O95639 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CPSF4O95639 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 AP005212.1-201ENST00000581547 1997 ntBASIC19.63■□□□□ 0.73
CPSF4O95639 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.63■□□□□ 0.73
CPSF4O95639 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CPSF4O95639 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.63■□□□□ 0.73
CPSF4O95639 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.63■□□□□ 0.73
CPSF4O95639 AL139246.5-201ENST00000606645 996 ntBASIC19.63■□□□□ 0.73
CPSF4O95639 AL354811.1-201ENST00000610286 706 ntBASIC19.63■□□□□ 0.73
CPSF4O95639 MIR6084-201ENST00000622012 110 ntBASIC19.63■□□□□ 0.73
CPSF4O95639 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CPSF4O95639 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 GABARAPL3-202ENST00000624044 1851 ntBASIC19.62■□□□□ 0.73
CPSF4O95639 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
CPSF4O95639 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CPSF4O95639 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 AP004607.4-201ENST00000530158 1459 ntBASIC19.62■□□□□ 0.73
CPSF4O95639 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CPSF4O95639 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.62■□□□□ 0.73
CPSF4O95639 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 AC142381.2-201ENST00000566120 298 ntBASIC19.62■□□□□ 0.73
CPSF4O95639 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.62■□□□□ 0.73
CPSF4O95639 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CPSF4O95639 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 AC007225.1-201ENST00000566331 1836 ntBASIC19.62■□□□□ 0.73
CPSF4O95639 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CPSF4O95639 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms