Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 CLEC4GP1-201ENST00000596555 870 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 FAM21FP-204ENST00000608637 956 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 AC006011.2-201ENST00000621313 1158 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 AC061975.6-201ENST00000579045 1553 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.28■□□□□ 0.2
COL6A5A8TX70 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL6A5A8TX70 AC027702.1-201ENST00000563810 1770 ntBASIC16.28■□□□□ 0.2
COL6A5A8TX70 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 AL031133.1-201ENST00000406807 723 ntBASIC16.27■□□□□ 0.2
COL6A5A8TX70 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL6A5A8TX70 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC16.27■□□□□ 0.2
COL6A5A8TX70 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
COL6A5A8TX70 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
COL6A5A8TX70 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 AC063952.2-201ENST00000498792 1227 ntBASIC16.27■□□□□ 0.19
COL6A5A8TX70 FITM1-202ENST00000559294 800 ntBASIC16.27■□□□□ 0.19
COL6A5A8TX70 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
COL6A5A8TX70 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL6A5A8TX70 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.27■□□□□ 0.19
COL6A5A8TX70 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A5A8TX70 AL353807.1-201ENST00000427475 662 ntBASIC16.26■□□□□ 0.19
COL6A5A8TX70 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A5A8TX70 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A5A8TX70 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A5A8TX70 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A5A8TX70 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A5A8TX70 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL6A5A8TX70 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.26■□□□□ 0.19
COL6A5A8TX70 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.26■□□□□ 0.19
COL6A5A8TX70 AL121906.2-201ENST00000621597 723 ntBASIC16.26■□□□□ 0.19
COL6A5A8TX70 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 LINC00526-201ENST00000581067 1875 ntBASIC16.25■□□□□ 0.19
COL6A5A8TX70 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 UNC93B2-201ENST00000285383 730 ntBASIC16.25■□□□□ 0.19
COL6A5A8TX70 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 AC005829.2-201ENST00000571422 1056 ntBASIC16.25■□□□□ 0.19
COL6A5A8TX70 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL6A5A8TX70 AP000593.1-201ENST00000393668 712 ntBASIC16.25■□□□□ 0.19
COL6A5A8TX70 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.25■□□□□ 0.19
COL6A5A8TX70 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms