Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LSM12P1-201ENST00000411836 588 ntBASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
SHROOM4Q9ULL8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 AC100791.3-201ENST00000617619 330 ntBASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC39.64■■■■□ 3.94
SHROOM4Q9ULL8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC39.63■■■■□ 3.94
SHROOM4Q9ULL8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC39.63■■■■□ 3.93
SHROOM4Q9ULL8 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC39.62■■■■□ 3.93
SHROOM4Q9ULL8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 KRT17P3-201ENST00000420566 1262 ntBASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC39.61■■■■□ 3.93
SHROOM4Q9ULL8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC39.6■■■■□ 3.93
SHROOM4Q9ULL8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 AC068473.5-201ENST00000616428 2072 ntBASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 FAM21FP-204ENST00000608637 956 ntBASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
SHROOM4Q9ULL8 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC39.58■■■■□ 3.93
SHROOM4Q9ULL8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC39.57■■■■□ 3.93
SHROOM4Q9ULL8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC39.57■■■■□ 3.93
SHROOM4Q9ULL8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC39.57■■■■□ 3.93
SHROOM4Q9ULL8 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC39.57■■■■□ 3.93
SHROOM4Q9ULL8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 SLC29A4P2-201ENST00000504749 1089 ntBASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC39.56■■■■□ 3.92
SHROOM4Q9ULL8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 AC087499.1-201ENST00000418141 1075 ntBASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
SHROOM4Q9ULL8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
SHROOM4Q9ULL8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms