Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 AC053503.5-201ENST00000601508 636 ntBASIC20.49■□□□□ 0.87
MKS1Q9NXB0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 RNF165-205ENST00000588679 2904 ntBASIC20.49■□□□□ 0.87
MKS1Q9NXB0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.49■□□□□ 0.87
MKS1Q9NXB0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 AP004607.4-201ENST00000530158 1459 ntBASIC20.48■□□□□ 0.87
MKS1Q9NXB0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.48■□□□□ 0.87
MKS1Q9NXB0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 AC112907.3-201ENST00000577781 2400 ntBASIC20.47■□□□□ 0.87
MKS1Q9NXB0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
MKS1Q9NXB0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 AC126544.1-201ENST00000580842 1059 ntBASIC20.46■□□□□ 0.87
MKS1Q9NXB0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 TCF3P1-201ENST00000423021 1937 ntBASIC20.46■□□□□ 0.87
MKS1Q9NXB0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.46■□□□□ 0.87
MKS1Q9NXB0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.87
MKS1Q9NXB0 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 AC105233.4-201ENST00000642045 216 ntBASIC20.45■□□□□ 0.86
MKS1Q9NXB0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.45■□□□□ 0.86
MKS1Q9NXB0 PCDHAC2-203ENST00000615316 3011 ntBASIC20.45■□□□□ 0.86
MKS1Q9NXB0 AC092720.2-201ENST00000602388 1665 ntBASIC20.45■□□□□ 0.86
MKS1Q9NXB0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MKS1Q9NXB0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms