Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
EXOSC3Q9NQT5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
EXOSC3Q9NQT5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 RBM17P2-201ENST00000616397 1405 ntBASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 UBE2DNL-204ENST00000602536 740 ntBASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
EXOSC3Q9NQT5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 KRT18P5-201ENST00000436075 1291 ntBASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 MYCNOS-205ENST00000641950 531 ntBASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC3Q9NQT5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
EXOSC3Q9NQT5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
EXOSC3Q9NQT5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
EXOSC3Q9NQT5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 KRT18P11-201ENST00000435214 1283 ntBASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC3Q9NQT5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms