Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 MIR663A-201ENST00000385250 93 ntBASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 AC091799.1-201ENST00000422823 811 ntBASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 AL162412.1-201ENST00000567129 965 ntBASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TRIM39Q9HCM9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM39Q9HCM9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM39Q9HCM9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 AC007375.3-201ENST00000600936 2314 ntBASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 AL050303.2-201ENST00000619798 666 ntBASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM39Q9HCM9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.52■□□□□ 0.87
TRIM39Q9HCM9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM39Q9HCM9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 NCF1B-203ENST00000435988 1254 ntBASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM39Q9HCM9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM39Q9HCM9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms