Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CDCA3Q99618 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.78■■□□□ 1.08
CDCA3Q99618 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CDCA3Q99618 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CDCA3Q99618 MIR4785-201ENST00000585005 73 ntBASIC21.78■■□□□ 1.08
CDCA3Q99618 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CDCA3Q99618 AL049637.2-201ENST00000641778 930 ntBASIC21.78■■□□□ 1.08
CDCA3Q99618 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CDCA3Q99618 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDCA3Q99618 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CDCA3Q99618 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CDCA3Q99618 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CDCA3Q99618 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CDCA3Q99618 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.77■■□□□ 1.08
CDCA3Q99618 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.77■■□□□ 1.08
CDCA3Q99618 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.77■■□□□ 1.08
CDCA3Q99618 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.77■■□□□ 1.08
CDCA3Q99618 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CDCA3Q99618 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
CDCA3Q99618 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CDCA3Q99618 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.77■■□□□ 1.07
CDCA3Q99618 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CDCA3Q99618 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 AC239809.2-201ENST00000415381 517 ntBASIC21.76■■□□□ 1.07
CDCA3Q99618 TSPY7P-201ENST00000431358 1114 ntBASIC21.76■■□□□ 1.07
CDCA3Q99618 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.76■■□□□ 1.07
CDCA3Q99618 AC116050.2-201ENST00000612102 1779 ntBASIC21.76■■□□□ 1.07
CDCA3Q99618 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDCA3Q99618 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CDCA3Q99618 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.75■■□□□ 1.07
CDCA3Q99618 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.75■■□□□ 1.07
CDCA3Q99618 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 AC110285.5-201ENST00000611501 352 ntBASIC21.75■■□□□ 1.07
CDCA3Q99618 AC120498.8-201ENST00000614275 531 ntBASIC21.75■■□□□ 1.07
CDCA3Q99618 AL023875.1-201ENST00000640777 796 ntBASIC21.75■■□□□ 1.07
CDCA3Q99618 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.75■■□□□ 1.07
CDCA3Q99618 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.75■■□□□ 1.07
CDCA3Q99618 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CDCA3Q99618 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.75■■□□□ 1.07
CDCA3Q99618 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.75■■□□□ 1.07
CDCA3Q99618 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDCA3Q99618 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.74■■□□□ 1.07
CDCA3Q99618 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.74■■□□□ 1.07
CDCA3Q99618 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CDCA3Q99618 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.74■■□□□ 1.07
CDCA3Q99618 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.74■■□□□ 1.07
CDCA3Q99618 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.74■■□□□ 1.07
CDCA3Q99618 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDCA3Q99618 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDCA3Q99618 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDCA3Q99618 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CDCA3Q99618 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDCA3Q99618 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDCA3Q99618 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CDCA3Q99618 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.73■■□□□ 1.07
CDCA3Q99618 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDCA3Q99618 KRT18P21-201ENST00000515767 1272 ntBASIC21.73■■□□□ 1.07
CDCA3Q99618 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
CDCA3Q99618 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.73■■□□□ 1.07
CDCA3Q99618 AC005829.2-201ENST00000571422 1056 ntBASIC21.73■■□□□ 1.07
CDCA3Q99618 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.73■■□□□ 1.07
CDCA3Q99618 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms