Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
LRCH3Q96II8 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
LRCH3Q96II8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LRCH3Q96II8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.57■■□□□ 1.2
LRCH3Q96II8 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LRCH3Q96II8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LRCH3Q96II8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LRCH3Q96II8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
LRCH3Q96II8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 UPK3BP1-201ENST00000428678 509 ntBASIC22.56■■□□□ 1.2
LRCH3Q96II8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 AC100791.3-201ENST00000617619 330 ntBASIC22.56■■□□□ 1.2
LRCH3Q96II8 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.56■■□□□ 1.2
LRCH3Q96II8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
LRCH3Q96II8 KRT8P9-201ENST00000558927 1449 ntBASIC22.56■■□□□ 1.2
LRCH3Q96II8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 OR7E47P-201ENST00000546390 1422 ntBASIC22.55■■□□□ 1.2
LRCH3Q96II8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LRCH3Q96II8 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
LRCH3Q96II8 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRCH3Q96II8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRCH3Q96II8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 AC026396.1-201ENST00000419388 421 ntBASIC22.54■■□□□ 1.2
LRCH3Q96II8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRCH3Q96II8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LRCH3Q96II8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LRCH3Q96II8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.54■■□□□ 1.2
LRCH3Q96II8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 AC104076.2-201ENST00000448912 469 ntBASIC22.53■■□□□ 1.2
LRCH3Q96II8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 AC079089.2-201ENST00000531211 1277 ntBASIC22.53■■□□□ 1.2
LRCH3Q96II8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LRCH3Q96II8 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
LRCH3Q96II8 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRCH3Q96II8 AP006587.3-201ENST00000525742 1516 ntBASIC22.52■■□□□ 1.2
LRCH3Q96II8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LRCH3Q96II8 TERF1P1-201ENST00000311003 1181 ntBASIC22.52■■□□□ 1.2
LRCH3Q96II8 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.52■■□□□ 1.2
LRCH3Q96II8 FAM21FP-204ENST00000608637 956 ntBASIC22.52■■□□□ 1.2
LRCH3Q96II8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms