Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RTF1Q92541 FBXW4P1-201ENST00000426721 2239 ntBASIC27.11■■□□□ 1.93
RTF1Q92541 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
RTF1Q92541 AC097658.1-201ENST00000475555 843 ntBASIC27.11■■□□□ 1.93
RTF1Q92541 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.11■■□□□ 1.93
RTF1Q92541 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
RTF1Q92541 DYM-203ENST00000442713 2147 ntTSL 2 BASIC27.11■■□□□ 1.93
RTF1Q92541 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC27.11■■□□□ 1.93
RTF1Q92541 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC27.1■■□□□ 1.93
RTF1Q92541 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC27.1■■□□□ 1.93
RTF1Q92541 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 ABHD17AP1-201ENST00000358206 933 ntBASIC27.1■■□□□ 1.93
RTF1Q92541 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC27.1■■□□□ 1.93
RTF1Q92541 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 SERPINH1P1-201ENST00000419794 1249 ntBASIC27.1■■□□□ 1.93
RTF1Q92541 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
RTF1Q92541 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC27.1■■□□□ 1.93
RTF1Q92541 RHEB-204ENST00000472642 900 ntTSL 3 BASIC27.1■■□□□ 1.93
RTF1Q92541 BET1L-207ENST00000529614 560 ntTSL 5 BASIC27.1■■□□□ 1.93
RTF1Q92541 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC27.1■■□□□ 1.93
RTF1Q92541 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC27.1■■□□□ 1.93
RTF1Q92541 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC27.1■■□□□ 1.93
RTF1Q92541 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RTF1Q92541 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 MCRIP2P1-201ENST00000394346 511 ntBASIC27.09■■□□□ 1.93
RTF1Q92541 DUSP5P2-201ENST00000426873 1033 ntBASIC27.09■■□□□ 1.93
RTF1Q92541 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC27.09■■□□□ 1.93
RTF1Q92541 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.09■■□□□ 1.93
RTF1Q92541 AC091874.3-201ENST00000512672 1195 ntBASIC27.09■■□□□ 1.93
RTF1Q92541 CYP2T3P-201ENST00000601990 817 ntBASIC27.09■■□□□ 1.93
RTF1Q92541 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RTF1Q92541 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC27.09■■□□□ 1.93
RTF1Q92541 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.08■■□□□ 1.93
RTF1Q92541 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC27.08■■□□□ 1.93
RTF1Q92541 KRT17P1-201ENST00000399211 1546 ntBASIC27.08■■□□□ 1.93
RTF1Q92541 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC27.08■■□□□ 1.93
RTF1Q92541 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC27.08■■□□□ 1.93
RTF1Q92541 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
RTF1Q92541 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
RTF1Q92541 TBCB-214ENST00000629269 413 ntTSL 5 BASIC27.08■■□□□ 1.93
RTF1Q92541 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC27.08■■□□□ 1.93
RTF1Q92541 MYC-209ENST00000641252 345 ntBASIC27.08■■□□□ 1.93
RTF1Q92541 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
RTF1Q92541 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RTF1Q92541 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RTF1Q92541 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC27.08■■□□□ 1.92
RTF1Q92541 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC27.07■■□□□ 1.92
RTF1Q92541 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC27.07■■□□□ 1.92
RTF1Q92541 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
RTF1Q92541 TSPY20P-201ENST00000450910 630 ntBASIC27.07■■□□□ 1.92
RTF1Q92541 OR2A1-AS1-201ENST00000462305 773 ntBASIC27.07■■□□□ 1.92
RTF1Q92541 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC27.07■■□□□ 1.92
RTF1Q92541 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC27.07■■□□□ 1.92
RTF1Q92541 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RTF1Q92541 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC27.06■■□□□ 1.92
RTF1Q92541 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
RTF1Q92541 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
RTF1Q92541 RNA5SP413-201ENST00000516373 109 ntBASIC27.06■■□□□ 1.92
RTF1Q92541 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC27.06■■□□□ 1.92
RTF1Q92541 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC27.06■■□□□ 1.92
RTF1Q92541 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.06■■□□□ 1.92
RTF1Q92541 AC083880.1-201ENST00000608266 535 ntBASIC27.06■■□□□ 1.92
RTF1Q92541 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RTF1Q92541 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC27.06■■□□□ 1.92
RTF1Q92541 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC27.06■■□□□ 1.92
RTF1Q92541 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.05■■□□□ 1.92
RTF1Q92541 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC27.05■■□□□ 1.92
RTF1Q92541 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 PALM-207ENST00000590161 2137 ntTSL 4 BASIC27.05■■□□□ 1.92
RTF1Q92541 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
RTF1Q92541 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms