Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DEPDC4Q8N2C3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
DEPDC4Q8N2C3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DEPDC4Q8N2C3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 AC073314.1-201ENST00000568729 2216 ntBASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.18■□□□□ 0.66
DEPDC4Q8N2C3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 AC003102.1-202ENST00000563394 1796 ntBASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 SLC47A1P1-202ENST00000449666 945 ntBASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 RARRES2P6-201ENST00000567333 442 ntBASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DEPDC4Q8N2C3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.16■□□□□ 0.66
DEPDC4Q8N2C3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms