Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 AC092666.2-201ENST00000613287 246 ntBASIC20.3■□□□□ 0.84
VRK3Q8IV63 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK3Q8IV63 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.3■□□□□ 0.84
VRK3Q8IV63 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 CNN2P6-201ENST00000439038 900 ntBASIC20.29■□□□□ 0.84
VRK3Q8IV63 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 AC121338.2-201ENST00000622535 1744 ntBASIC20.29■□□□□ 0.84
VRK3Q8IV63 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.29■□□□□ 0.84
VRK3Q8IV63 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VRK3Q8IV63 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VRK3Q8IV63 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.28■□□□□ 0.84
VRK3Q8IV63 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.28■□□□□ 0.84
VRK3Q8IV63 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
VRK3Q8IV63 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.27■□□□□ 0.84
VRK3Q8IV63 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.27■□□□□ 0.84
VRK3Q8IV63 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.27■□□□□ 0.84
VRK3Q8IV63 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VRK3Q8IV63 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK3Q8IV63 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VRK3Q8IV63 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VRK3Q8IV63 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VRK3Q8IV63 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.26■□□□□ 0.83
VRK3Q8IV63 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
VRK3Q8IV63 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.26■□□□□ 0.83
VRK3Q8IV63 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.26■□□□□ 0.83
VRK3Q8IV63 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 AC080038.1-201ENST00000611274 1154 ntBASIC20.26■□□□□ 0.83
VRK3Q8IV63 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK3Q8IV63 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms