Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 AC245052.3-201ENST00000450182 901 ntBASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 DUX4L16-201ENST00000555130 1264 ntBASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP54Q7Z3B4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 RBM17P2-201ENST00000616397 1405 ntBASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 AC231657.2-201ENST00000624556 255 ntBASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP54Q7Z3B4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUP54Q7Z3B4 FEM1AP4-201ENST00000443167 1987 ntBASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 AC013268.1-206ENST00000638368 961 ntBASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 AC112229.1-201ENST00000639295 961 ntBASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUP54Q7Z3B4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUP54Q7Z3B4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUP54Q7Z3B4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUP54Q7Z3B4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUP54Q7Z3B4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 RARRES2P11-201ENST00000635158 484 ntBASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 AC073111.5-205ENST00000641717 521 ntBASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NUP54Q7Z3B4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 AC007322.1-201ENST00000426983 750 ntBASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 CDCA4P2-201ENST00000441182 718 ntBASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.13■□□□□ 0.65
NUP54Q7Z3B4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms