Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 SLC7A5P2-201ENST00000553010 536 ntBASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 AC137761.2-201ENST00000561729 223 ntBASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 AC145350.3-201ENST00000569033 163 ntBASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 AL049796.1-201ENST00000565336 1766 ntBASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM40Q6P9F5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 KRT18P11-201ENST00000435214 1283 ntBASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 UBE2DNL-204ENST00000602536 740 ntBASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM40Q6P9F5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 AC016769.1-201ENST00000409132 1010 ntBASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 AC245052.3-201ENST00000450182 901 ntBASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 SLC7A5P1-201ENST00000568957 537 ntBASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM40Q6P9F5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.83■□□□□ 0.77
TRIM40Q6P9F5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM40Q6P9F5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 MYCNOS-205ENST00000641950 531 ntBASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms