Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 AP001160.3-201ENST00000601484 763 ntBASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 RAP2CP1-201ENST00000605103 478 ntBASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 AC011767.1-201ENST00000617410 1153 ntBASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD3Q3KNS1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 KRT18P11-201ENST00000435214 1283 ntBASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD3Q3KNS1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD3Q3KNS1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 AC026185.1-201ENST00000445748 174 ntBASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD3Q3KNS1 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 KRT16P2-201ENST00000414673 1423 ntBASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 HLA-L-209ENST00000420110 1011 ntBASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 MFSD11-216ENST00000590393 1141 ntBASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 UBE2DNL-204ENST00000602536 740 ntBASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 AC120498.10-201ENST00000621827 505 ntBASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD3Q3KNS1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 SLC7A5P2-201ENST00000553010 536 ntBASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD3Q3KNS1 PLK5-205ENST00000642079 1969 ntBASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD3Q3KNS1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms