Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 AC010980.2-201ENST00000587099 1412 ntBASIC19.91■□□□□ 0.78
COL28A1Q2UY09 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL28A1Q2UY09 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 RCN1P1-201ENST00000400413 996 ntBASIC19.9■□□□□ 0.78
COL28A1Q2UY09 KRT18P35-201ENST00000510488 1269 ntBASIC19.9■□□□□ 0.78
COL28A1Q2UY09 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 AC055733.4-201ENST00000638462 1354 ntBASIC19.9■□□□□ 0.78
COL28A1Q2UY09 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL28A1Q2UY09 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL28A1Q2UY09 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 ARMC10P1-201ENST00000313754 855 ntBASIC19.88■□□□□ 0.77
COL28A1Q2UY09 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 AC127496.7-201ENST00000625110 1798 ntBASIC19.88■□□□□ 0.77
COL28A1Q2UY09 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL28A1Q2UY09 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 SLC25A24-204ENST00000569674 2357 ntBASIC19.87■□□□□ 0.77
COL28A1Q2UY09 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL28A1Q2UY09 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 EP400NL-214ENST00000641289 2402 ntBASIC19.86■□□□□ 0.77
COL28A1Q2UY09 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL28A1Q2UY09 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL28A1Q2UY09 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms