Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HSPG2P98160 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.05□□□□□ -0.32
HSPG2P98160 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HSPG2P98160 AC009947.2-201ENST00000444014 672 ntBASIC13.05□□□□□ -0.32
HSPG2P98160 AP000525.1-201ENST00000608286 694 ntBASIC13.05□□□□□ -0.32
HSPG2P98160 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
HSPG2P98160 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.04□□□□□ -0.32
HSPG2P98160 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC13.04□□□□□ -0.32
HSPG2P98160 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC13.04□□□□□ -0.32
HSPG2P98160 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC13.04□□□□□ -0.32
HSPG2P98160 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.04□□□□□ -0.32
HSPG2P98160 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 RBM17P1-201ENST00000453646 1190 ntBASIC13.04□□□□□ -0.32
HSPG2P98160 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC13.04□□□□□ -0.32
HSPG2P98160 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC13.04□□□□□ -0.32
HSPG2P98160 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC13.04□□□□□ -0.32
HSPG2P98160 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.04□□□□□ -0.32
HSPG2P98160 AL137013.1-201ENST00000432946 1228 ntBASIC13.04□□□□□ -0.32
HSPG2P98160 AC104076.2-201ENST00000448912 469 ntBASIC13.04□□□□□ -0.32
HSPG2P98160 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC13.04□□□□□ -0.32
HSPG2P98160 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC13.04□□□□□ -0.32
HSPG2P98160 AC087388.1-201ENST00000571370 1112 ntBASIC13.04□□□□□ -0.32
HSPG2P98160 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HSPG2P98160 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
HSPG2P98160 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 SLC25A3P1-201ENST00000443844 931 ntBASIC13.03□□□□□ -0.32
HSPG2P98160 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
HSPG2P98160 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.03□□□□□ -0.32
HSPG2P98160 AL031963.3-201ENST00000606441 850 ntBASIC13.03□□□□□ -0.32
HSPG2P98160 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC13.03□□□□□ -0.32
HSPG2P98160 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC13.03□□□□□ -0.32
HSPG2P98160 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
HSPG2P98160 ABCB10P4-201ENST00000566803 2184 ntBASIC13.03□□□□□ -0.32
HSPG2P98160 NXN-202ENST00000537628 1340 ntTSL 3 BASIC13.03□□□□□ -0.32
HSPG2P98160 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HSPG2P98160 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HSPG2P98160 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HSPG2P98160 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC13.02□□□□□ -0.32
HSPG2P98160 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HSPG2P98160 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HSPG2P98160 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
HSPG2P98160 PRR31-201ENST00000371629 978 ntTSL 2 BASIC13.02□□□□□ -0.32
HSPG2P98160 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.02□□□□□ -0.32
HSPG2P98160 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC13.02□□□□□ -0.33
HSPG2P98160 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 GGT1-206ENST00000404223 952 ntTSL 2 BASIC13.02□□□□□ -0.33
HSPG2P98160 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HSPG2P98160 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HSPG2P98160 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.02□□□□□ -0.33
HSPG2P98160 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
HSPG2P98160 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.02□□□□□ -0.33
HSPG2P98160 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 AF186192.3-201ENST00000583427 947 ntBASIC13.02□□□□□ -0.33
HSPG2P98160 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
HSPG2P98160 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HSPG2P98160 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HSPG2P98160 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC13.01□□□□□ -0.33
HSPG2P98160 GUK1-204ENST00000366721 689 ntTSL 3 BASIC13.01□□□□□ -0.33
HSPG2P98160 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 AC091799.1-201ENST00000422823 811 ntBASIC13.01□□□□□ -0.33
HSPG2P98160 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC13.01□□□□□ -0.33
HSPG2P98160 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HSPG2P98160 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HSPG2P98160 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC13.01□□□□□ -0.33
HSPG2P98160 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HSPG2P98160 KRT18P22-201ENST00000402024 1347 ntBASIC13.01□□□□□ -0.33
HSPG2P98160 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC13.01□□□□□ -0.33
HSPG2P98160 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC13.01□□□□□ -0.33
HSPG2P98160 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HSPG2P98160 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms