Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CDH12P55289 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.28■□□□□ 0.68
CDH12P55289 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.28■□□□□ 0.68
CDH12P55289 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.28■□□□□ 0.68
CDH12P55289 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.28■□□□□ 0.68
CDH12P55289 AL031432.3-201ENST00000607698 485 ntBASIC19.28■□□□□ 0.68
CDH12P55289 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
CDH12P55289 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH12P55289 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.28■□□□□ 0.68
CDH12P55289 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CDH12P55289 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.27■□□□□ 0.68
CDH12P55289 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CDH12P55289 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.27■□□□□ 0.68
CDH12P55289 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CDH12P55289 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 AL136967.2-201ENST00000623968 743 ntBASIC19.27■□□□□ 0.68
CDH12P55289 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 AC121338.2-201ENST00000622535 1744 ntBASIC19.27■□□□□ 0.68
CDH12P55289 AC055733.4-201ENST00000638462 1354 ntBASIC19.27■□□□□ 0.68
CDH12P55289 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH12P55289 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH12P55289 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH12P55289 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.27■□□□□ 0.67
CDH12P55289 PCDHAC2-203ENST00000615316 3011 ntBASIC19.27■□□□□ 0.67
CDH12P55289 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH12P55289 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
CDH12P55289 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CDH12P55289 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CDH12P55289 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH12P55289 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 MIR572-201ENST00000384983 95 ntBASIC19.26■□□□□ 0.67
CDH12P55289 AC091305.1-201ENST00000479476 895 ntBASIC19.26■□□□□ 0.67
CDH12P55289 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH12P55289 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDH12P55289 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.26■□□□□ 0.67
CDH12P55289 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.26■□□□□ 0.67
CDH12P55289 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CDH12P55289 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
CDH12P55289 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH12P55289 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH12P55289 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH12P55289 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 BX005040.4-201ENST00000637145 1518 ntBASIC19.25■□□□□ 0.67
CDH12P55289 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH12P55289 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH12P55289 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 AC005224.4-201ENST00000583262 1652 ntBASIC19.24■□□□□ 0.67
CDH12P55289 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CDH12P55289 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDH12P55289 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH12P55289 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CDH12P55289 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CDH12P55289 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDH12P55289 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDH12P55289 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms