Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NEK3P51956 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.33■■□□□ 1.01
NEK3P51956 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
NEK3P51956 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.33■■□□□ 1.01
NEK3P51956 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 AC026185.1-201ENST00000445748 174 ntBASIC21.33■■□□□ 1.01
NEK3P51956 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.33■■□□□ 1.01
NEK3P51956 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.33■■□□□ 1.01
NEK3P51956 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 KRT18P20-201ENST00000548986 1279 ntBASIC21.33■■□□□ 1.01
NEK3P51956 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.33■■□□□ 1.01
NEK3P51956 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 MYCNOS-205ENST00000641950 531 ntBASIC21.33■■□□□ 1.01
NEK3P51956 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NEK3P51956 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.33■■□□□ 1.01
NEK3P51956 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.33■■□□□ 1
NEK3P51956 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.33■■□□□ 1
NEK3P51956 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.33■■□□□ 1
NEK3P51956 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NEK3P51956 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.32■■□□□ 1
NEK3P51956 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
NEK3P51956 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.32■■□□□ 1
NEK3P51956 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NEK3P51956 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.32■■□□□ 1
NEK3P51956 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.32■■□□□ 1
NEK3P51956 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.32■■□□□ 1
NEK3P51956 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.32■■□□□ 1
NEK3P51956 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
NEK3P51956 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
NEK3P51956 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.31■■□□□ 1
NEK3P51956 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.31■■□□□ 1
NEK3P51956 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.3■■□□□ 1
NEK3P51956 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NEK3P51956 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NEK3P51956 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.3■■□□□ 1
NEK3P51956 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.3■■□□□ 1
NEK3P51956 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NEK3P51956 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NEK3P51956 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NEK3P51956 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.3■■□□□ 1
NEK3P51956 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NEK3P51956 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.29■■□□□ 1
NEK3P51956 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.29■■□□□ 1
NEK3P51956 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.29■■□□□ 1
NEK3P51956 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.29■■□□□ 1
NEK3P51956 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.29■■□□□ 1
NEK3P51956 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.29■■□□□ 1
NEK3P51956 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.29■■□□□ 1
NEK3P51956 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.28■■□□□ 1
NEK3P51956 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NEK3P51956 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NEK3P51956 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms