Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CDX1P47902 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CDX1P47902 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
CDX1P47902 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CDX1P47902 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.8■□□□□ 0.28
CDX1P47902 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.8■□□□□ 0.28
CDX1P47902 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 AC079089.2-201ENST00000531211 1277 ntBASIC16.8■□□□□ 0.28
CDX1P47902 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX1P47902 TPRG1LP1-201ENST00000598702 760 ntBASIC16.8■□□□□ 0.28
CDX1P47902 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDX1P47902 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDX1P47902 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CDX1P47902 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CDX1P47902 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX1P47902 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC16.79■□□□□ 0.28
CDX1P47902 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX1P47902 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX1P47902 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CDX1P47902 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX1P47902 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDX1P47902 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
CDX1P47902 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDX1P47902 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CDX1P47902 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
CDX1P47902 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
CDX1P47902 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX1P47902 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX1P47902 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX1P47902 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.77■□□□□ 0.28
CDX1P47902 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 KRT18P5-201ENST00000436075 1291 ntBASIC16.77■□□□□ 0.28
CDX1P47902 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC16.77■□□□□ 0.28
CDX1P47902 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX1P47902 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CDX1P47902 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX1P47902 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CDX1P47902 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CDX1P47902 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CDX1P47902 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.77■□□□□ 0.27
CDX1P47902 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
CDX1P47902 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CDX1P47902 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CDX1P47902 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CDX1P47902 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX1P47902 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms