Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 KRT17P3-201ENST00000420566 1262 ntBASIC20.96■□□□□ 0.95
TNFRSF4P43489 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TNFRSF4P43489 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TNFRSF4P43489 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFRSF4P43489 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFRSF4P43489 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFRSF4P43489 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.95■□□□□ 0.94
TNFRSF4P43489 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TNFRSF4P43489 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.95■□□□□ 0.94
TNFRSF4P43489 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.95■□□□□ 0.94
TNFRSF4P43489 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.95■□□□□ 0.94
TNFRSF4P43489 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 UBE2SP1-201ENST00000450587 669 ntBASIC20.94■□□□□ 0.94
TNFRSF4P43489 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 RPS2P4-201ENST00000476944 856 ntBASIC20.94■□□□□ 0.94
TNFRSF4P43489 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.94■□□□□ 0.94
TNFRSF4P43489 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TNFRSF4P43489 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TNFRSF4P43489 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.93■□□□□ 0.94
TNFRSF4P43489 AL359736.2-201ENST00000621992 437 ntBASIC20.93■□□□□ 0.94
TNFRSF4P43489 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
TNFRSF4P43489 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 C2orf69P4-201ENST00000565394 541 ntBASIC20.92■□□□□ 0.94
TNFRSF4P43489 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TNFRSF4P43489 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.92■□□□□ 0.94
TNFRSF4P43489 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TNFRSF4P43489 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TNFRSF4P43489 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms