Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
HMGB1P09429 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGB1P09429 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
HMGB1P09429 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGB1P09429 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC24.47■■□□□ 1.51
HMGB1P09429 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.46■■□□□ 1.51
HMGB1P09429 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.46■■□□□ 1.51
HMGB1P09429 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.46■■□□□ 1.51
HMGB1P09429 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.46■■□□□ 1.51
HMGB1P09429 UBE2DNL-204ENST00000602536 740 ntBASIC24.46■■□□□ 1.51
HMGB1P09429 FGF8-207ENST00000618991 856 ntTSL 3 BASIC24.46■■□□□ 1.51
HMGB1P09429 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
HMGB1P09429 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
HMGB1P09429 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
HMGB1P09429 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGB1P09429 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
HMGB1P09429 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
HMGB1P09429 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
HMGB1P09429 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.45■■□□□ 1.51
HMGB1P09429 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
HMGB1P09429 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.45■■□□□ 1.51
HMGB1P09429 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
HMGB1P09429 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGB1P09429 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGB1P09429 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGB1P09429 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGB1P09429 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGB1P09429 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGB1P09429 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.45■■□□□ 1.5
HMGB1P09429 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGB1P09429 AC116050.2-201ENST00000612102 1779 ntBASIC24.44■■□□□ 1.5
HMGB1P09429 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGB1P09429 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
HMGB1P09429 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGB1P09429 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
HMGB1P09429 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.44■■□□□ 1.5
HMGB1P09429 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.44■■□□□ 1.5
HMGB1P09429 KRT18P5-201ENST00000436075 1291 ntBASIC24.44■■□□□ 1.5
HMGB1P09429 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
HMGB1P09429 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.44■■□□□ 1.5
HMGB1P09429 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.44■■□□□ 1.5
HMGB1P09429 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
HMGB1P09429 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.44■■□□□ 1.5
HMGB1P09429 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGB1P09429 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.44■■□□□ 1.5
HMGB1P09429 MYCNOS-205ENST00000641950 531 ntBASIC24.44■■□□□ 1.5
HMGB1P09429 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24.44■■□□□ 1.5
HMGB1P09429 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.44■■□□□ 1.5
HMGB1P09429 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGB1P09429 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.44■■□□□ 1.5
HMGB1P09429 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGB1P09429 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGB1P09429 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
HMGB1P09429 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
HMGB1P09429 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.42■■□□□ 1.5
HMGB1P09429 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
HMGB1P09429 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 KRT18P11-201ENST00000435214 1283 ntBASIC24.42■■□□□ 1.5
HMGB1P09429 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.42■■□□□ 1.5
HMGB1P09429 CD44-222ENST00000526025 1052 ntTSL 2 BASIC24.42■■□□□ 1.5
HMGB1P09429 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
HMGB1P09429 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
HMGB1P09429 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGB1P09429 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
HMGB1P09429 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.41■■□□□ 1.5
HMGB1P09429 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 AC091799.1-201ENST00000422823 811 ntBASIC24.41■■□□□ 1.5
HMGB1P09429 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.41■■□□□ 1.5
HMGB1P09429 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms