Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
RTN3O95197 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RTN3O95197 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
RTN3O95197 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.84■■□□□ 1.09
RTN3O95197 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
RTN3O95197 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
RTN3O95197 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
RTN3O95197 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.84■■□□□ 1.09
RTN3O95197 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 MKRN4P-201ENST00000444706 1521 ntBASIC21.84■■□□□ 1.09
RTN3O95197 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTN3O95197 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.83■■□□□ 1.09
RTN3O95197 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.83■■□□□ 1.09
RTN3O95197 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.83■■□□□ 1.09
RTN3O95197 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
RTN3O95197 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTN3O95197 FAM21FP-204ENST00000608637 956 ntBASIC21.83■■□□□ 1.09
RTN3O95197 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTN3O95197 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
RTN3O95197 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTN3O95197 AC244015.2-201ENST00000616358 1861 ntBASIC21.82■■□□□ 1.08
RTN3O95197 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.82■■□□□ 1.08
RTN3O95197 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.82■■□□□ 1.08
RTN3O95197 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.82■■□□□ 1.08
RTN3O95197 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.82■■□□□ 1.08
RTN3O95197 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
RTN3O95197 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTN3O95197 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RTN3O95197 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.81■■□□□ 1.08
RTN3O95197 AC093787.1-201ENST00000450396 207 ntBASIC21.81■■□□□ 1.08
RTN3O95197 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.81■■□□□ 1.08
RTN3O95197 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.81■■□□□ 1.08
RTN3O95197 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.81■■□□□ 1.08
RTN3O95197 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.81■■□□□ 1.08
RTN3O95197 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.81■■□□□ 1.08
RTN3O95197 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.81■■□□□ 1.08
RTN3O95197 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.81■■□□□ 1.08
RTN3O95197 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.81■■□□□ 1.08
RTN3O95197 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTN3O95197 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.8■■□□□ 1.08
RTN3O95197 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RTN3O95197 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.8■■□□□ 1.08
RTN3O95197 AL138781.1-201ENST00000566567 1274 ntBASIC21.8■■□□□ 1.08
RTN3O95197 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.8■■□□□ 1.08
RTN3O95197 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTN3O95197 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
RTN3O95197 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RTN3O95197 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTN3O95197 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RTN3O95197 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.79■■□□□ 1.08
RTN3O95197 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.79■■□□□ 1.08
RTN3O95197 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.79■■□□□ 1.08
RTN3O95197 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RTN3O95197 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 AC007375.3-201ENST00000600936 2314 ntBASIC21.78■■□□□ 1.08
RTN3O95197 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.78■■□□□ 1.08
RTN3O95197 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms