Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
LDB3O75112 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
LDB3O75112 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LDB3O75112 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LDB3O75112 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LDB3O75112 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LDB3O75112 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.52■□□□□ 0.71
LDB3O75112 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.51■□□□□ 0.71
LDB3O75112 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.51■□□□□ 0.71
LDB3O75112 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.51■□□□□ 0.71
LDB3O75112 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.51■□□□□ 0.71
LDB3O75112 AC080038.1-201ENST00000611274 1154 ntBASIC19.51■□□□□ 0.71
LDB3O75112 AC243732.1-201ENST00000612648 864 ntBASIC19.51■□□□□ 0.71
LDB3O75112 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LDB3O75112 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
LDB3O75112 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDB3O75112 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
LDB3O75112 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LDB3O75112 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.5■□□□□ 0.71
LDB3O75112 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.5■□□□□ 0.71
LDB3O75112 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.5■□□□□ 0.71
LDB3O75112 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDB3O75112 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.5■□□□□ 0.71
LDB3O75112 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
LDB3O75112 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.49■□□□□ 0.71
LDB3O75112 AC091799.1-201ENST00000422823 811 ntBASIC19.49■□□□□ 0.71
LDB3O75112 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
LDB3O75112 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
LDB3O75112 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.49■□□□□ 0.71
LDB3O75112 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.49■□□□□ 0.71
LDB3O75112 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDB3O75112 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
LDB3O75112 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
LDB3O75112 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.48■□□□□ 0.71
LDB3O75112 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.48■□□□□ 0.71
LDB3O75112 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.48■□□□□ 0.71
LDB3O75112 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 AC013268.1-206ENST00000638368 961 ntBASIC19.48■□□□□ 0.71
LDB3O75112 AC112229.1-201ENST00000639295 961 ntBASIC19.48■□□□□ 0.71
LDB3O75112 AC073111.5-205ENST00000641717 521 ntBASIC19.48■□□□□ 0.71
LDB3O75112 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.48■□□□□ 0.71
LDB3O75112 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LDB3O75112 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
LDB3O75112 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.47■□□□□ 0.71
LDB3O75112 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 CNN2P6-201ENST00000439038 900 ntBASIC19.47■□□□□ 0.71
LDB3O75112 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.47■□□□□ 0.71
LDB3O75112 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LDB3O75112 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDB3O75112 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.47■□□□□ 0.71
LDB3O75112 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
LDB3O75112 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LDB3O75112 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LDB3O75112 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms