Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1BO60663 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.2■□□□□ 0.5
LMX1BO60663 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.19■□□□□ 0.5
LMX1BO60663 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 AC006015.1-201ENST00000429970 570 ntBASIC18.19■□□□□ 0.5
LMX1BO60663 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LMX1BO60663 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.19■□□□□ 0.5
LMX1BO60663 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LMX1BO60663 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
LMX1BO60663 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1BO60663 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LMX1BO60663 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1BO60663 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1BO60663 AC055733.4-201ENST00000638462 1354 ntBASIC18.18■□□□□ 0.5
LMX1BO60663 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1BO60663 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1BO60663 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1BO60663 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1BO60663 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LMX1BO60663 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LMX1BO60663 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1BO60663 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
LMX1BO60663 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1BO60663 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1BO60663 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.17■□□□□ 0.5
LMX1BO60663 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.17■□□□□ 0.5
LMX1BO60663 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1BO60663 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.17■□□□□ 0.5
LMX1BO60663 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1BO60663 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1BO60663 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1BO60663 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.17■□□□□ 0.5
LMX1BO60663 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1BO60663 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LMX1BO60663 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1BO60663 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LMX1BO60663 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.16■□□□□ 0.5
LMX1BO60663 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.16■□□□□ 0.5
LMX1BO60663 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.16■□□□□ 0.5
LMX1BO60663 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1BO60663 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.16■□□□□ 0.5
LMX1BO60663 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LMX1BO60663 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1BO60663 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LMX1BO60663 AC006128.1-201ENST00000624704 1661 ntBASIC18.15■□□□□ 0.5
LMX1BO60663 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LMX1BO60663 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LMX1BO60663 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1BO60663 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.15■□□□□ 0.5
LMX1BO60663 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms