Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HMGN4O00479 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HMGN4O00479 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGN4O00479 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGN4O00479 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGN4O00479 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGN4O00479 KRT16P2-201ENST00000414673 1423 ntBASIC19.28■□□□□ 0.68
HMGN4O00479 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGN4O00479 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGN4O00479 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGN4O00479 RARRES2P11-201ENST00000635158 484 ntBASIC19.28■□□□□ 0.68
HMGN4O00479 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGN4O00479 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGN4O00479 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGN4O00479 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGN4O00479 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGN4O00479 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGN4O00479 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGN4O00479 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
HMGN4O00479 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGN4O00479 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HMGN4O00479 FP700111.2-201ENST00000619190 1892 ntBASIC19.27■□□□□ 0.68
HMGN4O00479 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGN4O00479 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HMGN4O00479 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGN4O00479 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGN4O00479 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.27■□□□□ 0.68
HMGN4O00479 TERF1P2-201ENST00000583350 1212 ntBASIC19.27■□□□□ 0.68
HMGN4O00479 AC104187.1-201ENST00000607510 612 ntBASIC19.27■□□□□ 0.68
HMGN4O00479 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGN4O00479 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGN4O00479 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGN4O00479 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGN4O00479 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.67
HMGN4O00479 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGN4O00479 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HMGN4O00479 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGN4O00479 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGN4O00479 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HMGN4O00479 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HMGN4O00479 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGN4O00479 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGN4O00479 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGN4O00479 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGN4O00479 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGN4O00479 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 YBX1P1-201ENST00000445822 960 ntBASIC19.26■□□□□ 0.67
HMGN4O00479 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGN4O00479 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGN4O00479 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGN4O00479 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
HMGN4O00479 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
HMGN4O00479 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
HMGN4O00479 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGN4O00479 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGN4O00479 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGN4O00479 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L2-201ENST00000561772 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGN4O00479 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L6-201ENST00000626483 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L1-201ENST00000627662 1275 ntBASIC19.25■□□□□ 0.67
HMGN4O00479 DUX4L8-201ENST00000629013 1275 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms