Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 UPK3BP1-201ENST00000428678 509 ntBASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 AC142381.3-201ENST00000568208 1670 ntBASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 AC061975.6-201ENST00000579045 1553 ntBASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 TPM4P1-201ENST00000436100 807 ntBASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 NUDT16P1-203ENST00000513809 620 ntBASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 KRASP1-201ENST00000407852 552 ntBASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A6A6NMZ7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 CDV3P1-201ENST00000471403 739 ntBASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A6A6NMZ7 AC020928.2-201ENST00000588717 2197 ntBASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A6A6NMZ7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 AC073508.3-201ENST00000619697 1419 ntBASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 AC091799.1-201ENST00000422823 811 ntBASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 AC026471.5-201ENST00000615068 467 ntBASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
COL6A6A6NMZ7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
COL6A6A6NMZ7 MMP23A-201ENST00000234610 1017 ntBASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 KRT18P22-201ENST00000402024 1347 ntBASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 AL121894.2-201ENST00000602977 491 ntBASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A6A6NMZ7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL6A6A6NMZ7 DUX4L26-201ENST00000489078 1255 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms