Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SMIM28A0A1B0GU29 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
SMIM28A0A1B0GU29 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.33■■□□□ 1.16
SMIM28A0A1B0GU29 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 CYP2T3P-201ENST00000601990 817 ntBASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
SMIM28A0A1B0GU29 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 KRT17P1-201ENST00000399211 1546 ntBASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 MYC-209ENST00000641252 345 ntBASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.31■■□□□ 1.16
SMIM28A0A1B0GU29 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 MCRIP2P1-201ENST00000394346 511 ntBASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 LSM12P1-201ENST00000411836 588 ntBASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 RHEB-204ENST00000472642 900 ntTSL 3 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 AC091874.3-201ENST00000512672 1195 ntBASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 BET1L-207ENST00000529614 560 ntTSL 5 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
SMIM28A0A1B0GU29 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 DUSP5P2-201ENST00000426873 1033 ntBASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 AC097658.1-201ENST00000475555 843 ntBASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 AC083880.1-201ENST00000608266 535 ntBASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SMIM28A0A1B0GU29 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC22.28■■□□□ 1.16
SMIM28A0A1B0GU29 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms