Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 SOX15-203ENST00000570788 1093 ntBASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA1Q9Y5H4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 POM121L13P-201ENST00000422362 380 ntBASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 LINC01023-201ENST00000606054 436 ntBASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PCDHGA1Q9Y5H4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
PCDHGA1Q9Y5H4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHGA1Q9Y5H4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.02■□□□□ 0.79
PCDHGA1Q9Y5H4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.79
PCDHGA1Q9Y5H4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHGA1Q9Y5H4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 AC211429.1-201ENST00000415277 523 ntBASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA1Q9Y5H4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 MIR1224-201ENST00000408193 85 ntBASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 AC007322.3-201ENST00000426526 701 ntBASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 AC012618.2-201ENST00000428058 849 ntBASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA1Q9Y5H4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms