Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC061975.6-201ENST00000579045 1553 ntBASIC18.88■□□□□ 0.61
SHANK1Q9Y566 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 LSM12P1-201ENST00000411836 588 ntBASIC18.88■□□□□ 0.61
SHANK1Q9Y566 CYP2T3P-201ENST00000601990 817 ntBASIC18.88■□□□□ 0.61
SHANK1Q9Y566 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHANK1Q9Y566 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 AC211429.1-201ENST00000415277 523 ntBASIC18.86■□□□□ 0.61
SHANK1Q9Y566 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 SNORA78-201ENST00000459373 127 ntBASIC18.86■□□□□ 0.61
SHANK1Q9Y566 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK1Q9Y566 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 KRT17P3-201ENST00000420566 1262 ntBASIC18.85■□□□□ 0.61
SHANK1Q9Y566 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK1Q9Y566 Z99916.2-201ENST00000604037 246 ntBASIC18.85■□□□□ 0.61
SHANK1Q9Y566 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 CLDN5-201ENST00000403084 2357 ntBASIC18.84■□□□□ 0.61
SHANK1Q9Y566 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK1Q9Y566 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 FAM210CP-201ENST00000445714 574 ntBASIC18.83■□□□□ 0.61
SHANK1Q9Y566 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.83■□□□□ 0.61
SHANK1Q9Y566 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHANK1Q9Y566 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.82■□□□□ 0.6
SHANK1Q9Y566 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms