Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATG4BQ9Y4P1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 AC245052.3-201ENST00000450182 901 ntBASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 IKBKGP1-201ENST00000612193 1073 ntBASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 MYCNOS-205ENST00000641950 531 ntBASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4BQ9Y4P1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4BQ9Y4P1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4BQ9Y4P1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4BQ9Y4P1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4BQ9Y4P1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4BQ9Y4P1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 PLK5-205ENST00000642079 1969 ntBASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4BQ9Y4P1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 RBM17P2-201ENST00000616397 1405 ntBASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4BQ9Y4P1 AC092437.1-201ENST00000624794 1048 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms