Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
CDK11AQ9UQ88 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 SOX15-203ENST00000570788 1093 ntBASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 AC105020.6-201ENST00000621523 1217 ntBASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CDK11AQ9UQ88 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 REXO2-208ENST00000539754 791 ntTSL 2 BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDK11AQ9UQ88 FAM99A-202ENST00000538190 1989 ntBASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
CDK11AQ9UQ88 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 AC069544.1-201ENST00000609399 999 ntBASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC32.27■■■□□ 2.76
CDK11AQ9UQ88 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
CDK11AQ9UQ88 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CDK11AQ9UQ88 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CDK11AQ9UQ88 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 AC233263.1-201ENST00000578059 224 ntBASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 MIR4497-201ENST00000583208 89 ntBASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC32.24■■■□□ 2.75
CDK11AQ9UQ88 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CDK11AQ9UQ88 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
CDK11AQ9UQ88 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC32.23■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms