Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
LIME1Q9H400 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.24■□□□□ 0.51
LIME1Q9H400 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.24■□□□□ 0.51
LIME1Q9H400 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.24■□□□□ 0.51
LIME1Q9H400 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.24■□□□□ 0.51
LIME1Q9H400 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.24■□□□□ 0.51
LIME1Q9H400 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.24■□□□□ 0.51
LIME1Q9H400 AC006058.3-201ENST00000606217 1069 ntBASIC18.24■□□□□ 0.51
LIME1Q9H400 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.24■□□□□ 0.51
LIME1Q9H400 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.24■□□□□ 0.51
LIME1Q9H400 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.23■□□□□ 0.51
LIME1Q9H400 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.23■□□□□ 0.51
LIME1Q9H400 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.23■□□□□ 0.51
LIME1Q9H400 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.23■□□□□ 0.51
LIME1Q9H400 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 AC142381.4-202ENST00000563973 229 ntBASIC18.23■□□□□ 0.51
LIME1Q9H400 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.23■□□□□ 0.51
LIME1Q9H400 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.23■□□□□ 0.51
LIME1Q9H400 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.23■□□□□ 0.51
LIME1Q9H400 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIME1Q9H400 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.22■□□□□ 0.51
LIME1Q9H400 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LIME1Q9H400 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LIME1Q9H400 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.22■□□□□ 0.51
LIME1Q9H400 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 RPS2P4-201ENST00000476944 856 ntBASIC18.22■□□□□ 0.51
LIME1Q9H400 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.22■□□□□ 0.51
LIME1Q9H400 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 AC008694.1-202ENST00000636953 945 ntBASIC18.22■□□□□ 0.51
LIME1Q9H400 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 AC005229.4-201ENST00000610085 2198 ntBASIC18.22■□□□□ 0.51
LIME1Q9H400 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.22■□□□□ 0.51
LIME1Q9H400 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIME1Q9H400 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIME1Q9H400 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
LIME1Q9H400 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.21■□□□□ 0.51
LIME1Q9H400 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 AL512625.2-201ENST00000417533 625 ntBASIC18.21■□□□□ 0.51
LIME1Q9H400 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LIME1Q9H400 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
LIME1Q9H400 AC097658.1-201ENST00000475555 843 ntBASIC18.21■□□□□ 0.51
LIME1Q9H400 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.21■□□□□ 0.51
LIME1Q9H400 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.21■□□□□ 0.51
LIME1Q9H400 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.21■□□□□ 0.51
LIME1Q9H400 AC069236.1-201ENST00000604339 616 ntBASIC18.21■□□□□ 0.51
LIME1Q9H400 MYC-209ENST00000641252 345 ntBASIC18.21■□□□□ 0.51
LIME1Q9H400 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIME1Q9H400 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
LIME1Q9H400 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.2■□□□□ 0.5
LIME1Q9H400 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIME1Q9H400 AC128676.1-201ENST00000454392 318 ntBASIC18.2■□□□□ 0.5
LIME1Q9H400 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.2■□□□□ 0.5
LIME1Q9H400 AC007322.4-201ENST00000509611 723 ntBASIC18.2■□□□□ 0.5
LIME1Q9H400 AC079089.2-201ENST00000531211 1277 ntBASIC18.2■□□□□ 0.5
LIME1Q9H400 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.2■□□□□ 0.5
LIME1Q9H400 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.2■□□□□ 0.5
LIME1Q9H400 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.2■□□□□ 0.5
LIME1Q9H400 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms