Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 CYP2T1P-201ENST00000432607 1285 ntBASIC26.1■■□□□ 1.77
USP44Q9H0E7 AC006970.2-201ENST00000450065 779 ntBASIC26.1■■□□□ 1.77
USP44Q9H0E7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 AL162412.1-201ENST00000567129 965 ntBASIC26.1■■□□□ 1.77
USP44Q9H0E7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.1■■□□□ 1.77
USP44Q9H0E7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP44Q9H0E7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
USP44Q9H0E7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC26.09■■□□□ 1.77
USP44Q9H0E7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
USP44Q9H0E7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC26.09■■□□□ 1.77
USP44Q9H0E7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC26.09■■□□□ 1.77
USP44Q9H0E7 AC133552.2-202ENST00000575694 574 ntBASIC26.09■■□□□ 1.77
USP44Q9H0E7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP44Q9H0E7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP44Q9H0E7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.08■■□□□ 1.77
USP44Q9H0E7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.08■■□□□ 1.77
USP44Q9H0E7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.08■■□□□ 1.77
USP44Q9H0E7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP44Q9H0E7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP44Q9H0E7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.08■■□□□ 1.77
USP44Q9H0E7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP44Q9H0E7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC26.08■■□□□ 1.77
USP44Q9H0E7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP44Q9H0E7 AC007375.3-201ENST00000600936 2314 ntBASIC26.08■■□□□ 1.76
USP44Q9H0E7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
USP44Q9H0E7 AL049796.1-201ENST00000565336 1766 ntBASIC26.07■■□□□ 1.76
USP44Q9H0E7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
USP44Q9H0E7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP44Q9H0E7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP44Q9H0E7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP44Q9H0E7 AC083906.2-201ENST00000511578 360 ntBASIC26.07■■□□□ 1.76
USP44Q9H0E7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
USP44Q9H0E7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.07■■□□□ 1.76
USP44Q9H0E7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC26.07■■□□□ 1.76
USP44Q9H0E7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP44Q9H0E7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP44Q9H0E7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC26.06■■□□□ 1.76
USP44Q9H0E7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC26.06■■□□□ 1.76
USP44Q9H0E7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 ID1-201ENST00000376105 1233 ntBASIC26.06■■□□□ 1.76
USP44Q9H0E7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.06■■□□□ 1.76
USP44Q9H0E7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP44Q9H0E7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
USP44Q9H0E7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC26.06■■□□□ 1.76
USP44Q9H0E7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP44Q9H0E7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 GUSBP6-202ENST00000438529 1198 ntBASIC26.05■■□□□ 1.76
USP44Q9H0E7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP44Q9H0E7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
USP44Q9H0E7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP44Q9H0E7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP44Q9H0E7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.04■■□□□ 1.76
USP44Q9H0E7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP44Q9H0E7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
USP44Q9H0E7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP44Q9H0E7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP44Q9H0E7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.03■■□□□ 1.76
USP44Q9H0E7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP44Q9H0E7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
USP44Q9H0E7 HLA-L-209ENST00000420110 1011 ntBASIC26.03■■□□□ 1.76
USP44Q9H0E7 RARRES2P4-201ENST00000514074 484 ntBASIC26.03■■□□□ 1.76
USP44Q9H0E7 AL121832.2-201ENST00000610979 668 ntBASIC26.03■■□□□ 1.76
USP44Q9H0E7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP44Q9H0E7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC26.03■■□□□ 1.76
USP44Q9H0E7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.03■■□□□ 1.76
USP44Q9H0E7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP44Q9H0E7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP44Q9H0E7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP44Q9H0E7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP44Q9H0E7 AC093787.1-201ENST00000450396 207 ntBASIC26.02■■□□□ 1.76
USP44Q9H0E7 AC104771.1-201ENST00000603335 964 ntBASIC26.02■■□□□ 1.76
USP44Q9H0E7 OR10C1-204ENST00000622521 1039 ntBASIC26.02■■□□□ 1.76
USP44Q9H0E7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.02■■□□□ 1.76
USP44Q9H0E7 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms