Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC31.62■■■□□ 2.65
SCAPERQ9BY12 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC31.61■■■□□ 2.65
SCAPERQ9BY12 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC31.61■■■□□ 2.65
SCAPERQ9BY12 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SCAPERQ9BY12 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC31.61■■■□□ 2.65
SCAPERQ9BY12 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SCAPERQ9BY12 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 C11orf96-202ENST00000528572 1834 ntBASIC31.6■■■□□ 2.65
SCAPERQ9BY12 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 AC113410.3-201ENST00000623366 203 ntBASIC31.6■■■□□ 2.65
SCAPERQ9BY12 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC31.6■■■□□ 2.65
SCAPERQ9BY12 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 TK2-213ENST00000563369 882 ntTSL 5 BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 NFE2L3P1-201ENST00000588207 1959 ntBASIC31.59■■■□□ 2.65
SCAPERQ9BY12 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SCAPERQ9BY12 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 PPOX-219ENST00000544598 813 ntTSL 2 BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 MIR4785-201ENST00000585005 73 ntBASIC31.58■■■□□ 2.65
SCAPERQ9BY12 AL023875.1-201ENST00000640777 796 ntBASIC31.58■■■□□ 2.65
SCAPERQ9BY12 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SCAPERQ9BY12 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 AL355075.4-201ENST00000554988 638 ntBASIC31.57■■■□□ 2.64
SCAPERQ9BY12 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SCAPERQ9BY12 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 LTK-203ENST00000453182 2412 ntTSL 2 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 SNX21-213ENST00000614929 587 ntTSL 5 BASIC31.56■■■□□ 2.64
SCAPERQ9BY12 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 AC239809.2-201ENST00000415381 517 ntBASIC31.55■■■□□ 2.64
SCAPERQ9BY12 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC31.55■■■□□ 2.64
SCAPERQ9BY12 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
SCAPERQ9BY12 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
SCAPERQ9BY12 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC31.52■■■□□ 2.64
SCAPERQ9BY12 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
SCAPERQ9BY12 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC31.52■■■□□ 2.64
SCAPERQ9BY12 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SCAPERQ9BY12 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms