Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 AL162377.1-201ENST00000618844 1793 ntBASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 AL512631.2-201ENST00000604634 923 ntBASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC28BQ9BUN5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 DUX4L19-201ENST00000557448 1267 ntBASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 SMUG1P1-201ENST00000590640 811 ntBASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 SYT6-210ENST00000641643 1587 ntBASIC20.17■□□□□ 0.82
CCDC28BQ9BUN5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 AC011298.3-201ENST00000615796 283 ntBASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC28BQ9BUN5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
CCDC28BQ9BUN5 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
CCDC28BQ9BUN5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC28BQ9BUN5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.14■□□□□ 0.82
CCDC28BQ9BUN5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CCDC28BQ9BUN5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC28BQ9BUN5 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC28BQ9BUN5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC28BQ9BUN5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC28BQ9BUN5 AFG3L1P-217ENST00000557444 2447 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms