Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 DUX4L16-201ENST00000555130 1264 ntBASIC19.07■□□□□ 0.64
TIMP4Q99727 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.07■□□□□ 0.64
TIMP4Q99727 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.07■□□□□ 0.64
TIMP4Q99727 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TIMP4Q99727 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
TIMP4Q99727 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TIMP4Q99727 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.06■□□□□ 0.64
TIMP4Q99727 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.06■□□□□ 0.64
TIMP4Q99727 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.06■□□□□ 0.64
TIMP4Q99727 HLA-L-209ENST00000420110 1011 ntBASIC19.06■□□□□ 0.64
TIMP4Q99727 AC006970.2-201ENST00000450065 779 ntBASIC19.06■□□□□ 0.64
TIMP4Q99727 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 AC231657.2-201ENST00000624556 255 ntBASIC19.06■□□□□ 0.64
TIMP4Q99727 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.06■□□□□ 0.64
TIMP4Q99727 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TIMP4Q99727 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.06■□□□□ 0.64
TIMP4Q99727 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.05■□□□□ 0.64
TIMP4Q99727 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.05■□□□□ 0.64
TIMP4Q99727 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.05■□□□□ 0.64
TIMP4Q99727 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
TIMP4Q99727 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.05■□□□□ 0.64
TIMP4Q99727 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TIMP4Q99727 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.04■□□□□ 0.64
TIMP4Q99727 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 AC003102.1-202ENST00000563394 1796 ntBASIC19.04■□□□□ 0.64
TIMP4Q99727 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TIMP4Q99727 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.04■□□□□ 0.64
TIMP4Q99727 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
TIMP4Q99727 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.04■□□□□ 0.64
TIMP4Q99727 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.04■□□□□ 0.64
TIMP4Q99727 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.04■□□□□ 0.64
TIMP4Q99727 SLC7A5P2-201ENST00000553010 536 ntBASIC19.04■□□□□ 0.64
TIMP4Q99727 SLC7A5P1-201ENST00000568957 537 ntBASIC19.04■□□□□ 0.64
TIMP4Q99727 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.04■□□□□ 0.64
TIMP4Q99727 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TIMP4Q99727 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.04■□□□□ 0.64
TIMP4Q99727 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.04■□□□□ 0.64
TIMP4Q99727 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TIMP4Q99727 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TIMP4Q99727 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TIMP4Q99727 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.03■□□□□ 0.64
TIMP4Q99727 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TIMP4Q99727 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TIMP4Q99727 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms