Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC65Q8IXS2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 KRT18P5-201ENST00000436075 1291 ntBASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 SLC7A5P1-201ENST00000568957 537 ntBASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC65Q8IXS2 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC65Q8IXS2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 PLK5-205ENST00000642079 1969 ntBASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC65Q8IXS2 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.27
CCDC65Q8IXS2 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 UBE2DNL-204ENST00000602536 740 ntBASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC65Q8IXS2 AC006128.1-201ENST00000624704 1661 ntBASIC23■■□□□ 1.27
CCDC65Q8IXS2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 MIR5787-201ENST00000611784 55 ntBASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms